Data Updates
December 21st, 2022
The HTAN DCC has finalized the third release of HTAN data. This v3 release includes new data from several atlases, and includes:
-
Level 1-2 data
- 94 new participants with scRNASeq
- 339 new participants with Bulk DNASeq
- 148 new participants with Bulk RNASeq
- 29 new participants with MIBI
- 5 new participants with H&E
- 2 new participants with CyCIF
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Level 3-4 data
- 181 new cases with higher level scRNASeq data
- 30 new cases with higher level segmentation data for Imaging
The Level 3-4 data are downloadable via the HTAN Data Portal. The Access-controlled level 1-2 data will be available through Seven Bridges Cancer Genomics Cloud (CGC) in the beginning of next year.
October 26th, 2022
Reintroduce Vanderbilt's cellxgene instance with updated single cell data including cell type annotations.
October 24th, 2022
Remove sequencing data that is not downloadable yet from the explore page. Add a "Download Source" filter button to allow filtering by data repository.
August 30th, 2022
Vanderbilt has Level 3 BulkDNASeq data available now
August 24th, 2022
Publication pages with associated data are now available for:
- Single-cell multiomics reveals increased plasticity, resistant populations, and stem-cell–like blasts in KMT2A-rearranged leukemia (Chen et al, 2022)
- An omic and multidimensional spatial atlas from serial biopsies of an evolving metastatic breast cancer (Johnson et al, 2022)
August 12th, 2022
Imaging data from HMS, OHSU and WashU are now available in DICOM-TIFF format from the Imaging Data Commons (IDC) .
July 11th, 2022
New data available for Trans-Network Project (TNP) SARDANA including CODEX, CyCIF, H&E and SABER.
June 15th, 2022
New WUSTL PDAC data available including 10X Visum, scRNASeq, Bulk DNA and RNA Seq as part of Release 2.3.
June 10th, 2022
All the HTAN MSKCC single cell sequencing data with harmonized cell type information is now available directly from the cellxgene website.
May 27th, 2022
Level 1 and 2 sequencing data are now available through dbGaP.
May 18th, 2022
HTAPP Level 4 scRNA-seq data (CRC) is now available as part of Release 2.2.
March 30th, 2022
Additional HTAN data have been released (Release 2.1).
March 25th, 2022
Disabled Vanderbilt's cellxgene instance pending new data updates.
March 5th, 2022
The second data release of HTAN public data is now available on the HTAN Data Portal. This v2.0 release includes new data from several HTAN atlases:
- 192 cases with new imaging data of which 86 have MIBI data, 105 CyCIF, and 1 both CyCIF and mIHC. This means people can now browse and view over 500 images in Minerva.
- 100 cases with new scRNASeq data of which 62 have level 3 and higher available for download, allowing for download and analysis of scRNASeq data from over 150 cases and 250 biospecimens.
- 1 case with both bulk DNASeq and RNASeq, which can now be explored in cBioPortal as well as downloaded from the data portal.
May 24th, 2021
The first release of HTAN public data is now available on the HTAN Data Portal. This release includes Level 3 and 4 scRNAseq data from several HTAN atlases.